Computer analysis of drugs could revolutionise the fight against new
infectious agents and antibiotic-resistant superbugs, scientists believe.
Researchers in Canada claim that the use of such computer-based "emergency
discovery" technology could save time, money and lives during a disease outbreak
or bioterrorism attack.
The repurposing or "reprofiling" of existing medication to deliberately
develop emergency drugs is a new concept, made possible by advances in
chemo-informatics.
This new field merges chemistry with computer science, according to study
presenter Artem Cherkasov, of the
University
of British Columbia in Vancouver.
"In the case of new infectious threats, there might be no time to develop a
completely new drug 'from the ground up' as the corresponding toxicological
studies and regulatory investigations will take years to complete properly,"
said Cherkasov.
"Finding an already existing, well-studied therapeutic agent that will kill
an emerging bug might provide a rapid 'first line of defence' response option."
Using the newly developed computer-aided system, the researchers plan to
identify vulnerable cellular components of a pathogen using proteomics, or the
study of proteins and their interactions.
They will enter these key structures into the computer and, using elements of
modern 'artificial intelligence', will identify drugs that have the highest
potential for activity against the target and for antimicrobial activity,
explained Cherkasov.
Those compounds with the highest 'ranking' can then be tested quickly in the
laboratory against the pathogen and eventually used to treat infected
individuals.
"The chemical structures of compounds we identify usually look nothing like
known antibiotics. But if a compound behaves like an antibiotic in a
computational model, it may act as one in a real life," said Cherkasov.
Cherkasov has programmed his computer system to identify 'antibiotic
likeness', or those chemical structures which have the most potential for
antibiotic activity.
There is a growing need to expand and complement the range of available
antimicrobial compounds, as many big pharmaceutical companies have withdrawn
from the field of anti-infective agents, according to Cherkasov.
Only two novel antibiotics have entered the market in the past 20 years, he
said.
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